How to Get Rid of Phragmites in Ponds (Best Tools & Methods)

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How to Get Rid of Phragmites in Ponds & Lakes 2022 (Top Methods)

how to get rid of phragmites invasive reed grass
Phragmites australis, also known as the common reed, can quickly become an invasive species in both ponds and lakes. Photo by Bernard DUPONT, CC BY-SA 2.0, via Wikimedia Commons.

Phragmites (Phragmites australis), also known as the common reed, is a species of subaquatic grass that can be found in North America and Europe. While there is a rare variety that is native to portions of the U.S. and Canada, a non-native, highly invasive variety arrived unintentionally from Europe sometime in the early 1900s via ships. In addition, up until a couple of decades ago, both the public and agencies such as the Department of Natural Resources were planting phragmites for ornamental purposes as well as to provide wildlife cover during habitat restoration projects. Now that its negative impacts are better understood, the opposite is true and massive efforts are being undertaken across much of the country to eradicate the species.

This invasive species grows in dense (more than 100 shoots per square meter!), 15 foot tall stands that choke out other vegetation, capable of forming thick underground rhizome mats at a rate of approximately 30 feet per year. Found by the U.S. Fish and Wildlife Service to notably diminish native flora and fauna populations, this grass is a substantial fire threat as masses of it die and dry up each autumn, and also creates an impenetrable mass that fish, waterfowl, beavers, and even deer cannot move through. Throughout much of the United States, phragmites has taken over wetlands, posing an acute threat to these vital and already-struggling ecosystems.

phragmites seed removal
Similar to cattails, phragmites are able to reproduce extremely fast through the rapid dispersal of seeds. Public domain.

Much like cattails, the speedy establishment and spread of invasive phragmites can be attributed to seed dispersal by wind and animals as well as sprouting from a shared rhizome or small group of rhizomes underground. Each rhizome is capable of propagating dozens to hundreds of new plants. Young phragmites can also reproduce quickly by sprouting stolons above ground. Phragmites typically prefers still or slow-moving water, and as such are of particular concern in lakes, wetlands, and ponds, including your personal backyard pond. As you may imagine, this species is difficult to control once established, but there are steps that you can take to remove it and prevent further spread.

The Best Natural Ways to Control Phragmites (No Chemicals)

1) Cutting Phragmites

how to cut phragmites
Cutting phragmites using heavy duty shears, scissors, or a weed whacker can help reduce smaller populations. Public domain.

This method has mixed results, as it may not always completely wipe out the population if the rhizomes don’t die off. You can conduct this method by hand (though this may be a tedious approach if you have a prominent phragmites population), cutting at or just above ground level using scissors, shears, or a weeding sickle. You can also cut using a brush cutter or weed whacker, but this should be done several inches above the ground to reduce the likelihood of damaging small mammals or native vegetation.

Ensure that you are cutting below the meristem, as cutting above it will only promote growth (this is why mowing your lawn can sometimes result in rapid grass regrowth). You can greatly minimize the chances of this occurring by cutting in late fall or after the ground has frozen, as the plant will not be able to grow and is more likely to die off. You’ll also have to be very thorough in cleaning equipment and clothing after, else you may unintentionally spread rhizomes and seeds to new areas.

2) Pulling Phragmites

aquatic rakes can help remove small amounts of phragmites
An aquatic rake designed for lakes and ponds can be used to make pulling phragmites easier.

Hand pulling phragmites is another approach, though it is considered difficult since they typically have extensive rhizome systems below ground. If you don’t pull up all of the rhizomes, the plant will simply resprout.

You can utilize an aquatic rake to help pull them up, but be aware that doing so may simply break the rhizomes rather than removing all of them and, again, the phragmites will just regenerate (are you beginning to get an idea of why this plant is so tricky to manage?). Again, be sure to clean off any equipment and clothing afterwards to ensure no seeds can be transported to other areas where they can begin to spread.

3) Burning Phragmites (Permit Required)

prescribed burns kill phragmites
Prescribed burns are an effective method of killing phragmites, but you may need to apply for a burn permit. Photo courtesy of U.S. Department of Agriculture; public domain.

Generally an effective method when used in conjunction with herbicide, burning will not only destroy the portion of the grass that is above ground, but will also heat up the soils and dry out the rhizomes and any dormant seeds, killing them as well.

Prescribed burns are now recognized as ecologically essential in a variety of ecosystems, as burning historically occurred naturally and helped ecosystems remain healthy and diverse without any one species outcompeting the rest. Fire is often viewed as negative, and as such has been unnaturally suppressed by humans for many decades. This has led to invasive species such as phragmites being able to spread with little resistance, increased fire severity when fires do actually occur (California, for example), and inhibits fire-dependent species like oak and sequoias from regenerating.

However, because this method is obviously dangerous, you will either need to obtain a burn permit from the Department of Environmental Quality, or contact a land management agency such as the Forest Service, DNR, or Fish and Wildlife Service to see if they can help you out (because phragmites is such an issue, they likely would if possible).

Burning will also need to be repeated for several years to ensure that phragmites is fully eliminated from the area, and is typically conducted during winter when soil moisture levels are the lowest (this safeguards that the rhizomes will also be killed off). Keep in mind that burning could also impact your pond’s residents; they may need to be relocated while the burn is occurring if they are not tolerant of water temperature increases.

The Most Effective Chemical Methods to Remove Phragmites (Best Herbicides)

how to kill phragmites in lakes and ponds
If you’re dealing with large amounts of phragmites, often a mix of manual and chemical methods if the most effective for removal. Public domain.

Though natural approaches are preferable and less harmful to other organisms, in the case of phragmites they are unfortunately not always the most effective and can sometimes make the issue worse. Manual removal methods prove the most successful and efficient in smaller water bodies, such as garden ponds, though when used carefully and appropriately, chemicals have demonstrated the greatest success overall with phragmites control and extermination.

As mentioned in previous articles, any chemical that is designed to kill something will have adverse impacts on other things as well and should be used with great care. This risk decreases somewhat as the size of the water body increases, and so chemical approaches are typically better suited to lakes. You will also likely need a license to apply most chemicals, or you may need a professional to treat the area (you could hire someone or, again, a registered environmental agency like those listed earlier may be able to help).

There are two herbicides that are currently approved for use on phragmites: glyphosate and imazapyr. Be aware that both of these chemicals will kill or at least damage any other plant that they come in contact with, so be precise when applying them and pay close attention to all instructions and regulations listed on their labels. To maximize your shot at defeating (or at least reducing) phragmites, try using cutting methods about two weeks after herbicide treatment. The herbicide will by then have had enough time to work its way through the plant, and will prevent the cutting from inadvertently stimulating further growth. More information on these herbicides can be found below:-

1) Glyphosate

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Glyphosate can be used by landowners on their own property without a special license, though you will need to be certain that you are only using the form that is approved for wetlands. Popular and effective glyphosate products include Rodeo, Aquamaster, and Aquaneat.

Regardless of the product you choose, again make quite sure that they are listed as an aquatic herbicide (it will say on the label), as it is illegal to use non-aquatic herbicides in aquatic ecosystems, including your own ornamental pond or lake. Glyphosate is easy to obtain and cheaper than imazapyr (below), though not as effective because it does not persist in the soil. The perk of that is a reduction in the potential for adverse impacts on other plants, fish, soil invertebrates, and so on.

2) Imazapyr (Licensed Use Only)

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  • The mix rate for Imazapyr does not matter. You just need to make sure to use 1 quart per acre. For spot treatments use .6 ounces per gallon.

Imazapyr has greater success with killing off phragmites, but persists in the soil and as such is prone to killing off native plants in the area as well. Because of this, it is recommended that imazapyr be used only when phragmites are well-established, extensive, or cannot be removed using alternate methods.

The only wetland-approved form of imazapyr is Habitat, and because of its volatile nature is only allowed to be applied by a certified or licensed aquatic pest control applicator. According to the label, it also cannot be used within a half mile upstream of a freshwater source that is used for food or water consumption. You also shouldn’t plant anything until a year after treatment, as imazapyr may still be present in the soil and could be taken up by the plants.

10 thoughts on “How to Get Rid of Phragmites in Ponds (Best Tools & Methods)”

  1. I have a small farm and small pond/wetland. The phragmites are getting out of control and I cannot pull them out. I have Roundup for farm use and I’m wondering if this can be used to control the phragmites?

    Thank you, I look forward to your advice.

    • Hi Holly,

      As someone who has spent the better part of a year professionally treating phragmites to restore wetlands, I can tell you that it’s a beast of an invasive plant and Roundup will definitely not work! It’s a very frustrating and challenging plant, BUT there is hope. Glyphosate will work, but you’ll have to apply it multiple times – usually 2-3 times per season is enough to finally kill them. For phragmites that’s in or near water, you’ll need to use aquatic glyphosate that’s safe for fish and waterfowl. Aquaneat and Aquamaster are, I believe, available for public purchase and non-permit use (double check application and permitting laws in your area first, to be safe!). They can be expensive, but treat a large range of invasives so it’s worth the price.

      They also need to be mixed with a surfactant to help the herbicide actually stick to the leaves. If it doesn’t stick, it won’t do much good. Cygnet plus is the surf that I have the most experience with, and it’s always stuck well for me when mixed properly. Dosage and mixing instructions should be on the labels for both the glyphosate and the surfactant.

      During this time of year (spring) before the phrag has fully grown, oftentimes disturbing the plants helps. This can consist of cutting them, tilling the soil – anything to stress them a bit. If there’s too much phrag to be able to do this in a timely manner, don’t worry about it. The best time to spray the plants is the end of June through September – this is when maximum growth is being achieved and the plant will soak up the most chemical. It’s also when leaves have become fairly large, so much more surface area for the glyphosate to be able to hit and soak into. Be sure to also mix some blue pond die into the mixture, so that you can tell where you’ve already sprayed and how much! You can also “hand wick” the plants. This consists of placing protective gloves on, and then cloth gloves over those and soaking the cloth glove with the glyphosate and then “wicking” your hand over the leaves. This works best for smaller areas of phragmites, as it can become pretty time consuming if there’s a massive patch.

      Imazapyr is another herbicide that works well, but is more volatile and I believe that you may need a permit in order to apply it.

      Keep in mind that treatment will have to keep occurring for multiple years, as it takes a long time for the rhizomes to fully die.

      Best of luck! I know it might seem daunting, but not treating is a far worse option than spending a couple of years on treatment. Seas of phragmites spread all too readily and destroy ecosystems, so I very much appreciate you reaching out for help and wanting to get rid of them!

      • After treating phragmites with glyphosate that are growing in the pond in shallow water, can they be pulled out by the root after two weeks or do they have to be cut only? If cut, what will happen to the root/rhizome? Will it just die and not re-sprout? Do you cut above or below the water, and how far Above or below? Thanks.

        • Hi Barbara,

          Phragmites will need to be treated multiple times with the glyphosate before it will be able to be removed – they have VERY strong root systems! They’re an incredibly hardy plant and usually need to be treated every 2 to 3 weeks for several months before they actually die. By this time, the roots should have also taken up enough of the chemical to also die and no longer give rise to new plants. If there isn’t too much phrag, you can certainly pull them out by the roots to be sure that they don’t come back! This can be difficult though if there are many of them; the roots are very strong. Also be forewarned that even dead phragmites is strong – I’ve been punctured by the dry, dead reeds before, even through clothing, so be sure to wear protective layers and thick gloves whether you cut them or pull them out!

          If you decide to not pull, you can cut them. I would cut them just above the water’s surface, though as far as I’m aware it doesn’t much matter whether they are cut above or below the water. Cutting them won’t of course remove the roots, so if the glyphosate didn’t fully kill them then there may be some resprouting the next season (though it will be significantly less, and much easier to control!), but it will keep the dead reeds from decaying in the pond or lake and influencing water quality.

          The state of Michigan has published a really handy and in-depth guide if you’re interested! It’s long, but very helpful, and a tool that licensed individuals use:

          • Thank you Beckie. This guide is great, but there is no mention of applying Glyphosate multiple times in the same season. For my situation, it advises to apply (very soon), then cut after at least two weeks later. Do I apply again if it’s still green after two weeks, and then wait another 2 weeks to cut? Also we will need to get into the pond with waders in order to apply, and then again to cut. Will we be trampling on the rhizomes or hinder the process in any way by being in the water?

          • Hi Barbara,

            No problem! Glad to help!

            The article is just meant as a baseline guide – we didn’t include specifics on treatment frequency or concentration as that differs per case. We did make sure to include a link to the product label, though, which has more specific instructions and specifies the different concentrations needed for different uses/situations. I will say that in my experience with professionally treating phragmites, it almost always takes multiple treatments. I would, yes, treat again if the phrag is still green in two weeks, and then wait another couple of weeks to cut. Cutting won’t do much unless the stalks are dead and dry. I know it’s a pain, especially considering where they grow and having to gear up to remove them! In terms of having to walk into the water on the rhizomes, that won’t hinder the process.

  2. Can a large area of phragmites roots along a beach area be dredged to remove root structure after chemical treatment and cutting. The area in question is now above water, but mucky.


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